Potassium ion channel embedded in a cell membrane and surrounded by potassium and chloride ions floating among water molecules. Click to enlarge

Possible positions of potassium ions following the lowest energy pathways through the channel. Click to enlarge

Scientists zero in on how ion channels coordinate the high-volume passage of potassium into and out of cells.

Don't stop now: it's rush hour inside your body. Every second of every moment, ions by the billions are flooding in and out of your cells. These mass migrations send waves of electric charge changes coursing down your nerves, transmitting sensory signals and muscle commands as fast as electricity can carry them.

Ions arrive and depart from cells almost instantaneously, streaming through the oily membrane surrounding each cell as fast as if it weren't there. But in reality, each charged atom must pass through one of thousands of portals in the membrane known as an ion channels, designed to allow a specific kind of ion to enter. For example, channels for potassium must prevent similar ions such as sodium--which are nearly the same size as potassium atoms and carry an identical positive charge--from squeezing through at the same time. By rights, this filtering should slow your body's business to a crawl. Just how ion channels can conduct traffic so quickly and selectively baffled researchers for years.

Now, biophysicists Benoit Roux and Simon Berneche of Weill Medical College at Cornell University have described mass ion migration in unprecedented detail. With the help of Alliance supercomputers at NCSA, they simulate the passage of ions through a potassium channel at the atomic scale. The results offer scientists valuable perspectives on how ion channels and other molecular machines operate in every living cell.


Access Online | Posted 10-22-2002